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I ran into this same stuttering after remuxing to mkv and then playing the video on a Roku. Solved the issue by first fixing the avi with the mpeg4_unpack_bframes filter, then remuxing that as mkv. See https://www.ffmpeg.org/ffmpeg-bitstream-filters.html#mpeg4_005funpack_005fbframes Posting here as this is the top Search result when searching "avi to ...


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